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Protein Structure Prediction: Methods and Protocols - Methods in Molecular Biology, vol. 143 consist or 18 chapters with different authors, which are: - Multiple Sequence Alignment by Desmond G. Higgins and William R. Taylor; - Protein Structure Comparison Using SAP by William R. Taylor - Discovering Patterns Conserved in Sets of Unaligned Protein Sequences by Inge Jonassen - Identification of Domains from Protein Sequences by Chris P. Ponting and Ewan Birney - Third Generation Prediction of Secondary Structures by Burkhard Rost and Chris Sander - Comparative Protein Structure Modeling Introduction and Practical Examples with Modeller by Roberto Sánchez and Andrej Sali - A Practical Guide to Protein Structure Prediction by David T. Jones - Derivation and Testing Residue–Residue Mean–Force Potentials for Use in Protein Structure Recognition by Boris A. Reva, Alexei V. Finkelstein, and Jeffrey Skolnick - Genetic Algorithms and Protein Folding by Steffen Schulze-Kremer - Scoring Functions for ab initio Protein Structure Prediction by Enoch S. Huang, Ram Samudrala, and Britt H. Park - Ab Initio Loop Modeling and Its Application to Homology Modeling by Robert E. Bruccoleri - The Dead-End Elimination Theorem:Mathematical Aspects, Implementation, Optimizations, Evaluation and Performance by Marc De Maeyer, Johan Desmet, and Ignace Lasters - Classification of Protein Folds by Robert B. Russell - Modeling Transmembrane Helix Bundles by Restrained MD Simulations by Mark S. P. Sansom and Leo Davison - Predictive Models of Protein-Active Sites by D. Eric Walters - Flexible Docking of Peptide Ligands to Proteins by Johan Desmet, Marc De Maeyer, Jan Spriet, and Ignace Lasters - Geometrical Docking Algorithms A Practical Approach by Haim J. Wolfson and Ruth Nussinov - Protein–Protein Docking Generation and Filtering of Complexes by Michael J. E. Sternberg, Henry A. Gabb, Richard M. Jackson, and Gidon Moont