Begining Perl for Bioinformatics
Keterangan Bibliografi
Pengarang | : Tisdall, James |
Pengarang 2 | : |
Kontributor | : |
Penerbit | : O'reilly & Associates, Inc. |
Kota terbit | : Sebastopol, California |
Tahun terbit | : 2001 |
ISBN | : 0-596-00080-4 |
Subyek | : Bioinfoematic - Perl language |
Klasifikasi | : 005.1 Tis B |
Bahasa | : English |
Edisi | : |
Halaman | : 394 hlm.: ilus. |
Jenis Koleksi Pustaka
E-Book
Kategori Pustaka
Tidak ada kategori
Abstraksi
Beginning Perl for Bioinformatics, There are thirteen chapters and two appendixes in this book:
Chapter 1 - This chapter covers some key concepts in molecular biology, as well as how biology and computer science fit together.
Chapter 2 - This chapter shows you how to get Perl up and running on your computer.
Chapter 3 - provides an overview as to how programmers accomplish their jobs.
Some of the most important practical strategies good programmers use are
explained, and where to find answers to questions that arise while you are
programming is carefully laid out. These ideas are made concrete by brief
narrative case studies that show how programmers, given a problem, find its
solution.
Chapter 4 - In Chapter 4 you start writing Perl programs with DNA and proteins. The programs transcribe DNA to RNA, concatenate sequences, make the reverse complement of DNA, read sequences data from files, and more.
Chapter 5 - This chapter continues demonstrating the basics of the Perl language with programs that search for motifs in DNA or protein, interact with users at the keyboard, write data to files, use loops and conditional tests, use regular expressions, and operate on strings and arrays.
Chapter 6 - This chapter extends the basic knowledge of Perl in two main directions: subroutines, which are an important way to structure programs, and the use of the Perl debugger, which can examine in detail a running Perl program.
Chapter 7 - Genetic mutations, fundamental to biology, are modelled as random events using the random number generator in Perl. This chapter uses random numbers to generate DNA sequence data sets, and to repeatedly mutate DNA sequence. Loops, subroutines, and lexical scoping are also discussed.
Chapter 8 - This chapter shows how to translate DNA to proteins, using the genetic code. It also covers a good bit more of the Perl programming language, such as the hash data type, sorted and unsorted arrays, binary search, relational databases, and DBM, and how to handle FASTA formatted sequence data.
Chapter 9 - This chapter contains an introduction to Perl regular expressions. The main focus of the chapter is the development of a program to calculate a restriction map for a DNA sequence.
Chapter 10 - The Genetic Sequence Data Bank (GenBank) is central to modern biology and bioinformatics. In this chapter, you learn how to write programs to extract information from GenBank files and libraries. You will also make a database to create your own rapid access lookups on a GenBank library.
Chapter 11 - This chapter develops a program that can parse Protein Data Bank (PDB) files. Some interesting Perl techniques are encountered while doing so, such as finding and iterating over lots of files and controlling other bioinformatics programs from a Perl program.
Chapter 12 - Chapter 12 develops some code to parse a BLAST output file. Also mentioned are the Bioperl project and its BLAST parser, and some additional ways to format output in Perl.
Chapter 13 - Chapter 13 looks ahead to topics beyond the scope of this book.
Inventaris
# | Inventaris | Dapat dipinjam | Status Ada |
1 | 8875/P1/2020.c1 | Ya | |
2 | 8876/P1/2020.c2 | Ya | |
3 | 8877/P1/2020.c3 | Ya | |
4 | 8878/P1/2020.c4 | Ya | |
5 | 8879/P1/2020.c5 | Ya | |
6 | 8880/P1/2020.c6 | Ya |